Detailed information of SNP:
|
SNP ID:
sf0505632529(Gbrowse)
Chromosome: chr05 Position: 5632529 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 96.26% | 3.74% |
| All Indica | 799 | 96.50% | 3.50% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0505632529 | T->C | LOC_Os05g10310(LOC_Os05g10310.3) | Synonymous |
| sf0505632529 | T->C | LOC_Os05g10310(LOC_Os05g10310.1) | Synonymous |
| sf0505632529 | T->C | LOC_Os05g10310(LOC_Os05g10310.2) | Synonymous |