Detailed information of SNP:
|
SNP ID:
sf0505633693(Gbrowse)
Chromosome: chr05 Position: 5633693 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 97.11% | 2.89% |
| All Indica | 798 | 97.24% | 2.76% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 210 | 93.81% | 6.19% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0505633693 | A->G | INTERGENIC | None |