Detailed information of SNP:
|
SNP ID:
sf0505638810(Gbrowse)
Chromosome: chr05 Position: 5638810 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 86.45% | 13.55% |
| All Indica | 798 | 97.12% | 2.88% |
| All Japonica | 496 | 72.18% | 27.82% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 210 | 94.29% | 5.71% |
| Temperate Japonica | 334 | 62.57% | 37.43% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0505638810 | A->G | LOC_Os05g10330(LOC_Os05g10330.1) | INTRON |