Detailed information of SNP:
|
SNP ID:
sf0505673248(Gbrowse)
Chromosome: chr05 Position: 5673248 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 52.96% | 47.04% |
| All Indica | 798 | 77.44% | 22.56% |
| All Japonica | 497 | 22.54% | 77.46% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 79.95% | 20.05% |
| Indica II | 213 | 79.81% | 20.19% |
| Indica Intermediate | 211 | 70.62% | 29.38% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0505673248 | C->T | INTERGENIC | None |