Detailed information of SNP:
|
SNP ID:
sf0505693724(Gbrowse)
Chromosome: chr05 Position: 5693724 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1254 | 83.81% | 16.19% |
| All Indica | 666 | 76.58% | 23.42% |
| All Japonica | 481 | 95.43% | 4.57% |
| Aus | 57 | 66.67% | 33.33% |
| Indica I | 310 | 79.03% | 20.97% |
| Indica II | 184 | 72.83% | 27.17% |
| Indica Intermediate | 172 | 76.16% | 23.84% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 83 | 74.70% | 25.30% |
| Japonica Intermediate | 64 | 98.44% | 1.56% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 38 | 84.21% | 15.79% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0505693724 | A->G | LOC_Os05g10460(LOC_Os05g10460.1) | Synonymous |