Detailed information of SNP:
|
SNP ID:
sf0505704403(Gbrowse)
Chromosome: chr05 Position: 5704403 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1355 | 90.63% | 9.37% |
| All Indica | 795 | 99.87% | 0.13% |
| All Japonica | 441 | 73.47% | 26.53% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 286 | 63.99% | 36.01% |
| Tropical Japonica | 92 | 93.48% | 6.52% |
| Japonica Intermediate | 63 | 87.30% | 12.70% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 38 | 86.84% | 13.16% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0505704403 | A->G | INTERGENIC | None |