Detailed information of SNP:
|
SNP ID:
sf0505745976(Gbrowse)
Chromosome: chr05 Position: 5745976 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1375 | 98.62% | 1.38% |
| All Indica | 790 | 100.00% | 0.00% |
| All Japonica | 467 | 95.93% | 4.07% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 208 | 100.00% | 0.00% |
| Temperate Japonica | 309 | 94.17% | 5.83% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 64 | 98.44% | 1.56% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0505745976 | G->A | INTERGENIC | None |