Detailed information of SNP:
|
SNP ID:
sf0505749395(Gbrowse)
Chromosome: chr05 Position: 5749395 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1230 | 66.26% | 33.74% |
| All Indica | 678 | 52.95% | 47.05% |
| All Japonica | 450 | 88.67% | 11.33% |
| Aus | 53 | 43.40% | 56.60% |
| Indica I | 311 | 64.95% | 35.05% |
| Indica II | 184 | 22.28% | 77.72% |
| Indica Intermediate | 183 | 63.39% | 36.61% |
| Temperate Japonica | 331 | 98.79% | 1.21% |
| Tropical Japonica | 63 | 41.27% | 58.73% |
| Japonica Intermediate | 56 | 82.14% | 17.86% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 35 | 62.86% | 37.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0505749395 | C->T | INTERGENIC | None |