Detailed information of SNP:
|
SNP ID:
sf0505753876(Gbrowse)
Chromosome: chr05 Position: 5753876 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 78.55% | 21.45% |
| All Indica | 787 | 63.66% | 36.34% |
| All Japonica | 488 | 98.16% | 1.84% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 61.99% | 38.01% |
| Indica II | 212 | 66.04% | 33.96% |
| Indica Intermediate | 204 | 64.22% | 35.78% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 87 | 93.10% | 6.90% |
| Japonica Intermediate | 66 | 98.48% | 1.52% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0505753876 | G->A | INTERGENIC | None |