Detailed information of SNP:
|
SNP ID:
sf0505756060(Gbrowse)
Chromosome: chr05 Position: 5756060 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1372 | 52.19% | 47.81% |
| All Indica | 754 | 23.74% | 76.26% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 66 | 18.18% | 81.82% |
| Indica I | 348 | 24.43% | 75.57% |
| Indica II | 203 | 18.23% | 81.77% |
| Indica Intermediate | 203 | 28.08% | 71.92% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0505756060 | C->G | INTERGENIC | None |