Detailed information of SNP:
|
SNP ID:
sf0505805904(Gbrowse)
Chromosome: chr05 Position: 5805904 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 73.11% | 26.89% |
| All Indica | 797 | 87.58% | 12.42% |
| All Japonica | 497 | 49.90% | 50.10% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 374 | 81.82% | 18.18% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 85.71% | 14.29% |
| Temperate Japonica | 335 | 36.42% | 63.58% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 60.29% | 39.71% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0505805904 | A->C | INTERGENIC | None |