Detailed information of SNP:
|
SNP ID:
sf0505806299(Gbrowse)
Chromosome: chr05 Position: 5806299 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 53.49% | 46.51% |
| All Indica | 799 | 83.98% | 16.02% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 79.20% | 20.80% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0505806299 | C->T | INTERGENIC | None |