Detailed information of SNP:
|
SNP ID:
sf0505815180(Gbrowse)
Chromosome: chr05 Position: 5815180 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1243 | 96.86% | 3.14% |
| All Indica | 787 | 99.87% | 0.13% |
| All Japonica | 337 | 88.72% | 11.28% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 367 | 99.73% | 0.27% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 187 | 81.28% | 18.72% |
| Tropical Japonica | 89 | 98.88% | 1.12% |
| Japonica Intermediate | 61 | 96.72% | 3.28% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0505815180 | C->G | LOC_Os05g10650(LOC_Os05g10650.1) | Non-Synonymous SNP |