Detailed information of SNP:
|
SNP ID:
sf0505822247(Gbrowse)
Chromosome: chr05 Position: 5822247 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1399 | 72.34% | 27.66% |
| All Indica | 787 | 94.03% | 5.97% |
| All Japonica | 490 | 33.47% | 66.53% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 95.12% | 4.88% |
| Indica II | 211 | 94.79% | 5.21% |
| Indica Intermediate | 207 | 91.30% | 8.70% |
| Temperate Japonica | 331 | 11.48% | 88.52% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 65 | 61.54% | 38.46% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0505822247 | G->A | INTERGENIC | None |