Detailed information of SNP:
|
SNP ID:
sf0505835255(Gbrowse)
Chromosome: chr05 Position: 5835255 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1365 | 90.55% | 9.45% |
| All Indica | 789 | 99.37% | 0.63% |
| All Japonica | 490 | 78.78% | 21.22% |
| Aus | 32 | 59.38% | 40.62% |
| Indica I | 370 | 100.00% | 0.00% |
| Indica II | 211 | 99.05% | 0.95% |
| Indica Intermediate | 208 | 98.56% | 1.44% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 89 | 14.61% | 85.39% |
| Japonica Intermediate | 67 | 65.67% | 34.33% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0505835255 | G->A | INTERGENIC | None |