Detailed information of SNP:
|
SNP ID:
sf0505835543(Gbrowse)
Chromosome: chr05 Position: 5835543 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 67.02% | 32.98% |
| All Indica | 799 | 82.60% | 17.40% |
| All Japonica | 497 | 41.05% | 58.95% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 76.27% | 23.73% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 335 | 24.18% | 75.82% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 52.94% | 47.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0505835543 | A->G | INTERGENIC | None |