Detailed information of SNP:
|
SNP ID:
sf0505864603(Gbrowse)
Chromosome: chr05 Position: 5864603 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 95.50% | 4.50% |
| All Indica | 793 | 92.18% | 7.82% |
| All Japonica | 485 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 91.67% | 8.33% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 208 | 92.79% | 7.21% |
| Temperate Japonica | 327 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 65 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0505864603 | C->T | INTERGENIC | None |