Detailed information of SNP:
|
SNP ID:
sf0505887649(Gbrowse)
Chromosome: chr05 Position: 5887649 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 95.41% | 4.59% |
| All Indica | 798 | 98.87% | 1.13% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 22.73% | 77.27% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0505887649 | C->T | LOC_Os05g10700(LOC_Os05g10700.1) | Synonymous |