Detailed information of SNP:
|
SNP ID:
sf0505968455(Gbrowse)
Chromosome: chr05 Position: 5968455 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 84.73% | 15.27% |
| All Indica | 799 | 96.75% | 3.25% |
| All Japonica | 496 | 74.60% | 25.40% |
| Aus | 66 | 15.15% | 84.85% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 67 | 44.78% | 55.22% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0505968455 | G->A | INTERGENIC | None |