Detailed information of SNP:
|
SNP ID:
sf0506005277(Gbrowse)
Chromosome: chr05 Position: 6005277 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1401 | 89.51% | 10.49% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 489 | 78.32% | 21.68% |
| Aus | 59 | 47.46% | 52.54% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 87 | 22.99% | 77.01% |
| Japonica Intermediate | 67 | 47.76% | 52.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506005277 | T->C | INTERGENIC | None |