Detailed information of SNP:
|
SNP ID:
sf0506060588(Gbrowse)
Chromosome: chr05 Position: 6060588 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1271 | 89.06% | 10.94% |
| All Indica | 738 | 83.33% | 16.67% |
| All Japonica | 415 | 98.80% | 1.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 355 | 85.35% | 14.65% |
| Indica II | 198 | 75.76% | 24.24% |
| Indica Intermediate | 185 | 87.57% | 12.43% |
| Temperate Japonica | 264 | 98.86% | 1.14% |
| Tropical Japonica | 91 | 100.00% | 0.00% |
| Japonica Intermediate | 60 | 96.67% | 3.33% |
| Group VI/Aromatic | 13 | 53.85% | 46.15% |
| Intermediate | 38 | 86.84% | 13.16% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506060588 | C->T | INTERGENIC | None |