Detailed information of SNP:
|
SNP ID:
sf0506100395(Gbrowse)
Chromosome: chr05 Position: 6100395 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1383 | 89.01% | 10.99% |
| All Indica | 770 | 81.30% | 18.70% |
| All Japonica | 491 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 81.52% | 18.48% |
| Indica II | 205 | 80.49% | 19.51% |
| Indica Intermediate | 197 | 81.73% | 18.27% |
| Temperate Japonica | 329 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506100395 | G->A | INTERGENIC | None |