Detailed information of SNP:
|
SNP ID:
sf0506101765(Gbrowse)
Chromosome: chr05 Position: 6101765 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1140 | 69.47% | 30.53% |
| All Indica | 529 | 71.46% | 28.54% |
| All Japonica | 495 | 74.95% | 25.05% |
| Aus | 63 | 1.59% | 98.41% |
| Indica I | 175 | 63.43% | 36.57% |
| Indica II | 167 | 81.44% | 18.56% |
| Indica Intermediate | 187 | 70.05% | 29.95% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 93 | 10.75% | 89.25% |
| Japonica Intermediate | 67 | 49.25% | 50.75% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506101765 | T->A | INTERGENIC | None |