Detailed information of SNP:
|
SNP ID:
sf0506124503(Gbrowse)
Chromosome: chr05 Position: 6124503 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1146 | 91.71% | 8.29% |
| All Indica | 614 | 87.95% | 12.05% |
| All Japonica | 424 | 95.99% | 4.01% |
| Aus | 58 | 94.83% | 5.17% |
| Indica I | 264 | 83.71% | 16.29% |
| Indica II | 181 | 90.61% | 9.39% |
| Indica Intermediate | 169 | 91.72% | 8.28% |
| Temperate Japonica | 330 | 100.00% | 0.00% |
| Tropical Japonica | 47 | 80.85% | 19.15% |
| Japonica Intermediate | 47 | 82.98% | 17.02% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 37 | 97.30% | 2.70% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506124503 | G->T | LOC_Os05g10970(LOC_Os05g10970.1) | INTRON |