Detailed information of SNP:
|
SNP ID:
sf0506131866(Gbrowse)
Chromosome: chr05 Position: 6131866 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 87.16% | 12.84% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 495 | 75.96% | 24.04% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 66 | 48.48% | 51.52% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506131866 | T->C | INTERGENIC | None |