Detailed information of SNP:
|
SNP ID:
sf0506134776(Gbrowse)
Chromosome: chr05 Position: 6134776 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 71.46% | 28.54% |
| All Indica | 799 | 97.37% | 2.63% |
| All Japonica | 497 | 38.23% | 61.77% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 47.16% | 52.84% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506134776 | T->C | LOC_Os05g10980(LOC_Os05g10980.1) | INTRON |