Detailed information of SNP:
|
SNP ID:
sf0506146803(Gbrowse)
Chromosome: chr05 Position: 6146803 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 51.63% | 48.37% |
| All Indica | 795 | 43.14% | 56.86% |
| All Japonica | 496 | 68.35% | 31.65% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 372 | 26.88% | 73.12% |
| Indica II | 212 | 58.96% | 41.04% |
| Indica Intermediate | 211 | 55.92% | 44.08% |
| Temperate Japonica | 335 | 59.10% | 40.90% |
| Tropical Japonica | 93 | 91.40% | 8.60% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506146803 | T->C | INTERGENIC | None |