Detailed information of SNP:
|
SNP ID:
sf0506159211(Gbrowse)
Chromosome: chr05 Position: 6159211 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1362 | 57.12% | 42.88% |
| All Indica | 797 | 44.17% | 55.83% |
| All Japonica | 444 | 84.01% | 15.99% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 375 | 28.27% | 71.73% |
| Indica II | 212 | 59.43% | 40.57% |
| Indica Intermediate | 210 | 57.14% | 42.86% |
| Temperate Japonica | 333 | 98.50% | 1.50% |
| Tropical Japonica | 62 | 17.74% | 82.26% |
| Japonica Intermediate | 49 | 69.39% | 30.61% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506159211 | A->G | INTERGENIC | None |