Detailed information of SNP:
|
SNP ID:
sf0506178915(Gbrowse)
Chromosome: chr05 Position: 6178915 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 87.37% | 12.63% |
| All Indica | 797 | 98.87% | 1.13% |
| All Japonica | 491 | 78.00% | 22.00% |
| Aus | 65 | 16.92% | 83.08% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 89 | 19.10% | 80.90% |
| Japonica Intermediate | 67 | 55.22% | 44.78% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506178915 | C->T | INTERGENIC | None |