Detailed information of SNP:
|
SNP ID:
sf0506183712(Gbrowse)
Chromosome: chr05 Position: 6183712 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1354 | 63.96% | 36.04% |
| All Indica | 734 | 80.65% | 19.35% |
| All Japonica | 497 | 45.47% | 54.53% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 334 | 76.35% | 23.65% |
| Indica II | 203 | 89.16% | 10.84% |
| Indica Intermediate | 197 | 79.19% | 20.81% |
| Temperate Japonica | 335 | 57.91% | 42.09% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506183712 | C->T | INTERGENIC | None |