Detailed information of SNP:
|
SNP ID:
sf0506202306(Gbrowse)
Chromosome: chr05 Position: 6202306 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 95.70% | 4.30% |
| All Indica | 797 | 99.62% | 0.38% |
| All Japonica | 480 | 88.75% | 11.25% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 99.04% | 0.96% |
| Temperate Japonica | 331 | 98.19% | 1.81% |
| Tropical Japonica | 83 | 55.42% | 44.58% |
| Japonica Intermediate | 66 | 83.33% | 16.67% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506202306 | C->T | INTERGENIC | None |