Detailed information of SNP:
|
SNP ID:
sf0506202416(Gbrowse)
Chromosome: chr05 Position: 6202416 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 85.42% | 14.58% |
| All Indica | 793 | 91.30% | 8.70% |
| All Japonica | 484 | 73.76% | 26.24% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 205 | 83.90% | 16.10% |
| Temperate Japonica | 324 | 64.20% | 35.80% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 66 | 86.36% | 13.64% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506202416 | T->A | INTERGENIC | None |