Detailed information of SNP:
|
SNP ID:
sf0506206206(Gbrowse)
Chromosome: chr05 Position: 6206206 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1382 | 56.66% | 43.34% |
| All Indica | 766 | 55.74% | 44.26% |
| All Japonica | 496 | 56.05% | 43.95% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 354 | 72.60% | 27.40% |
| Indica II | 208 | 38.94% | 61.06% |
| Indica Intermediate | 204 | 43.63% | 56.37% |
| Temperate Japonica | 335 | 43.88% | 56.12% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 67 | 68.66% | 31.34% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 39 | 38.46% | 61.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506206206 | T->C | INTERGENIC | None |