Detailed information of SNP:
|
SNP ID:
sf0506223783(Gbrowse)
Chromosome: chr05 Position: 6223783 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 86.96% | 13.04% |
| All Indica | 789 | 98.23% | 1.77% |
| All Japonica | 488 | 77.25% | 22.75% |
| Aus | 64 | 25.00% | 75.00% |
| Indica I | 370 | 99.73% | 0.27% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 207 | 95.65% | 4.35% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 88 | 12.50% | 87.50% |
| Japonica Intermediate | 65 | 56.92% | 43.08% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506223783 | C->T | LOC_Os05g11080(LOC_Os05g11080.1) | INTRON |