Detailed information of SNP:
|
SNP ID:
sf0506230489(Gbrowse)
Chromosome: chr05 Position: 6230489 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1382 | 89.51% | 10.49% |
| All Indica | 789 | 98.73% | 1.27% |
| All Japonica | 485 | 78.14% | 21.86% |
| Aus | 52 | 57.69% | 42.31% |
| Indica I | 367 | 99.73% | 0.27% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 209 | 97.13% | 2.87% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 86 | 18.60% | 81.40% |
| Japonica Intermediate | 65 | 52.31% | 47.69% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506230489 | C->T | LOC_Os05g11080(LOC_Os05g11080.1) | INTRON |