Detailed information of SNP:
|
SNP ID:
sf0506230569(Gbrowse)
Chromosome: chr05 Position: 6230569 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 84.58% | 15.42% |
| All Indica | 797 | 95.86% | 4.14% |
| All Japonica | 495 | 75.56% | 24.44% |
| Aus | 66 | 16.67% | 83.33% |
| Indica I | 373 | 97.32% | 2.68% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 12.77% | 87.23% |
| Japonica Intermediate | 66 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506230569 | C->T | LOC_Os05g11080(LOC_Os05g11080.1) | INTRON |