Detailed information of SNP:
|
SNP ID:
sf0506243297(Gbrowse)
Chromosome: chr05 Position: 6243297 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 56.91% | 43.09% |
| All Indica | 798 | 41.23% | 58.77% |
| All Japonica | 497 | 74.65% | 25.35% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 24.27% | 75.73% |
| Indica II | 212 | 58.96% | 41.04% |
| Indica Intermediate | 211 | 53.55% | 46.45% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 48.53% | 51.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506243297 | C->T | LOC_Os05g11110(LOC_Os05g11110.1) | Non-Synonymous SNP |