Detailed information of SNP:
|
SNP ID:
sf0506264319(Gbrowse)
Chromosome: chr05 Position: 6264319 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 65.21% | 34.79% |
| All Indica | 799 | 63.20% | 36.80% |
| All Japonica | 496 | 75.20% | 24.80% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 40.00% | 60.00% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 211 | 79.15% | 20.85% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 67 | 52.24% | 47.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506264319 | T->A | INTERGENIC | None |