Detailed information of SNP:
|
SNP ID:
sf0506270887(Gbrowse)
Chromosome: chr05 Position: 6270887 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 64.92% | 35.08% |
| All Indica | 797 | 63.11% | 36.89% |
| All Japonica | 495 | 74.55% | 25.45% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 374 | 39.57% | 60.43% |
| Indica II | 212 | 88.68% | 11.32% |
| Indica Intermediate | 211 | 79.15% | 20.85% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 66 | 48.48% | 51.52% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506270887 | T->C | LOC_Os05g11130(LOC_Os05g11130.1) | INTRON |