Detailed information of SNP:
|
SNP ID:
sf0506364402(Gbrowse)
Chromosome: chr05 Position: 6364402 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1397 | 72.94% | 27.06% |
| All Indica | 796 | 68.59% | 31.41% |
| All Japonica | 497 | 80.89% | 19.11% |
| Aus | 48 | 56.25% | 43.75% |
| Indica I | 374 | 47.86% | 52.14% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 209 | 82.78% | 17.22% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 28.72% | 71.28% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506364402 | G->A | INTERGENIC | None |