Detailed information of SNP:



SNP ID: sf0506364402(Gbrowse)

Chromosome: chr05

Position: 6364402
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1397 72.94% 27.06%
All Indica796 68.59% 31.41%
All Japonica497 80.89% 19.11%
Aus48 56.25% 43.75%
Indica I374 47.86% 52.14%
Indica II213 91.08% 8.92%
Indica Intermediate209 82.78% 17.22%
Temperate Japonica335 98.81% 1.19%
Tropical Japonica94 28.72% 71.28%
Japonica Intermediate68 64.71% 35.29%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 71.43% 28.57%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0506364402 G->A INTERGENIC None