Detailed information of SNP:
|
SNP ID:
sf0506364949(Gbrowse)
Chromosome: chr05 Position: 6364949 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 68.36% | 31.64% |
| All Indica | 798 | 67.42% | 32.58% |
| All Japonica | 496 | 76.41% | 23.59% |
| Aus | 66 | 16.67% | 83.33% |
| Indica I | 375 | 46.40% | 53.60% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 210 | 81.43% | 18.57% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 93 | 10.75% | 89.25% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506364949 | T->C | INTERGENIC | None |