Detailed information of SNP:
|
SNP ID:
sf0506412215(Gbrowse)
Chromosome: chr05 Position: 6412215 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 94.19% | 5.81% |
| All Indica | 798 | 97.37% | 2.63% |
| All Japonica | 496 | 88.91% | 11.09% |
| Aus | 62 | 95.16% | 4.84% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 54.84% | 45.16% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506412215 | C->T | INTERGENIC | None |