Detailed information of SNP:
|
SNP ID:
sf0506428093(Gbrowse)
Chromosome: chr05 Position: 6428093 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 89.78% | 10.22% |
| All Indica | 799 | 96.87% | 3.13% |
| All Japonica | 497 | 88.33% | 11.67% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 52.13% | 47.87% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506428093 | G->T | LOC_Os05g11380(LOC_Os05g11380.1) | INTRON |
| sf0506428093 | G->T | LOC_Os05g11380(LOC_Os05g11380.2) | INTRON |