Detailed information of SNP:
|
SNP ID:
sf0506467468(Gbrowse)
Chromosome: chr05 Position: 6467468 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 80.48% | 19.52% |
| All Indica | 799 | 80.73% | 19.27% |
| All Japonica | 497 | 88.33% | 11.67% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 375 | 80.80% | 19.20% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 68.25% | 31.75% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 51.06% | 48.94% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506467468 | A->T | INTERGENIC | None |