Detailed information of SNP:
|
SNP ID:
sf0506481845(Gbrowse)
Chromosome: chr05 Position: 6481845 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1291 | 90.40% | 9.60% |
| All Indica | 755 | 99.87% | 0.13% |
| All Japonica | 418 | 71.29% | 28.71% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 359 | 99.72% | 0.28% |
| Indica II | 196 | 100.00% | 0.00% |
| Indica Intermediate | 200 | 100.00% | 0.00% |
| Temperate Japonica | 263 | 56.27% | 43.73% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 63 | 93.65% | 6.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506481845 | T->C | INTERGENIC | None |