Detailed information of SNP:
|
SNP ID:
sf0506496991(Gbrowse)
Chromosome: chr05 Position: 6496991 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 80.18% | 19.82% |
| All Indica | 799 | 79.10% | 20.90% |
| All Japonica | 496 | 88.71% | 11.29% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 375 | 82.13% | 17.87% |
| Indica II | 213 | 86.85% | 13.15% |
| Indica Intermediate | 211 | 65.88% | 34.12% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 51.61% | 48.39% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506496991 | T->C | INTERGENIC | None |