Detailed information of SNP:
|
SNP ID:
sf0506503779(Gbrowse)
Chromosome: chr05 Position: 6503779 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 79.38% | 20.62% |
| All Indica | 797 | 78.04% | 21.96% |
| All Japonica | 496 | 88.51% | 11.49% |
| Aus | 63 | 20.63% | 79.37% |
| Indica I | 374 | 80.48% | 19.52% |
| Indica II | 212 | 86.32% | 13.68% |
| Indica Intermediate | 211 | 65.40% | 34.60% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 52.69% | 47.31% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506503779 | T->C | INTERGENIC | None |