Detailed information of SNP:
|
SNP ID:
sf0506565655(Gbrowse)
Chromosome: chr05 Position: 6565655 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1392 | 86.93% | 13.07% |
| All Indica | 779 | 77.66% | 22.34% |
| All Japonica | 490 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 89.19% | 10.81% |
| Indica II | 208 | 56.25% | 43.75% |
| Indica Intermediate | 201 | 78.61% | 21.39% |
| Temperate Japonica | 330 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506565655 | G->A | INTERGENIC | None |