Detailed information of SNP:
|
SNP ID:
sf0506583249(Gbrowse)
Chromosome: chr05 Position: 6583249 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 74.84% | 25.16% |
| All Indica | 799 | 78.85% | 21.15% |
| All Japonica | 497 | 75.86% | 24.14% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 375 | 88.00% | 12.00% |
| Indica II | 213 | 80.28% | 19.72% |
| Indica Intermediate | 211 | 61.14% | 38.86% |
| Temperate Japonica | 335 | 93.13% | 6.87% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506583249 | G->T | INTERGENIC | None |