Detailed information of SNP:
|
SNP ID:
sf0506590571(Gbrowse)
Chromosome: chr05 Position: 6590571 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1383 | 94.65% | 5.35% |
| All Indica | 796 | 99.62% | 0.38% |
| All Japonica | 467 | 85.44% | 14.56% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 208 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 68 | 29.41% | 70.59% |
| Japonica Intermediate | 65 | 76.92% | 23.08% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0506590571 | G->A | INTERGENIC | None |